Transcript | Gene symbol | Prediction | Tree vote | Model | Prediction problem | Splice site change | Known ClinVar disease mutation | Potential ClinVar disease mutation | Amino acid changes | Variant type | dbSNP ID | Protein length | Features at a glance |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ENST00000372923(MANE Select) | DNM1 | Deleterious | 98|2 | simple_ | No | Yes | Single base exchange | Normal |
| ||||
DNM1 | Deleterious | 99|1 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 99|1 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 99|1 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
| |||||
DNM1 | Deleterious | 100|0 | simple_ | No | Yes | Single base exchange | Normal |
|
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.42, LOF (oe): 0.30, misssense (oe): 0.58, synonymous (oe): 1.00 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000372923.8 | |||||||||||||
Genbank transcript ID | NM_004408 (exact from MANE) | |||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSRSGQA SPSRPESPRP PFDL* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSRSGQA SPSRPESPRP PFDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2595 / 2595 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 865 / 865 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2687 / 2687 | |||||||||||||
Position of start ATG in wt / mu cDNA | 93 / 93 | |||||||||||||
Last intron/exon boundary | 2626 | |||||||||||||
Theoretical NMD boundary in CDS | 2483 | |||||||||||||
Length of CDS | 2595 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1282 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.11 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.41, LOF (oe): 0.29, misssense (oe): 0.57, synonymous (oe): 1.01 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000341179.11 | |||||||||||||
Genbank transcript ID | NM_001005336 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2556 / 2556 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 852 / 852 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2648 / 2648 | |||||||||||||
Position of start ATG in wt / mu cDNA | 93 / 93 | |||||||||||||
Last intron/exon boundary | 2663 | |||||||||||||
Theoretical NMD boundary in CDS | 2520 | |||||||||||||
Length of CDS | 2556 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1282 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.13 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.41, LOF (oe): 0.29, misssense (oe): 0.57, synonymous (oe): 1.01 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000627543.2 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2556 / 2556 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 852 / 852 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2610 / 2610 | |||||||||||||
Position of start ATG in wt / mu cDNA | 55 / 55 | |||||||||||||
Last intron/exon boundary | 2588 | |||||||||||||
Theoretical NMD boundary in CDS | 2483 | |||||||||||||
Length of CDS | 2556 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1244 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.37 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.38, LOF (oe): 0.27, misssense (oe): 0.57, synonymous (oe): 1.02 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000486160.3 | |||||||||||||
Genbank transcript ID | NM_001288739 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGACGGGCCTCTTCA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGACGGGCCTCTTCA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSRSGQA SPSRPESPRP PFDL* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSRSGQA SPSRPESPRP PFDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2595 / 2595 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 865 / 865 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2651 / 2651 | |||||||||||||
Position of start ATG in wt / mu cDNA | 57 / 57 | |||||||||||||
Last intron/exon boundary | 2590 | |||||||||||||
Theoretical NMD boundary in CDS | 2483 | |||||||||||||
Length of CDS | 2595 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1246 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.38 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.38, LOF (oe): 0.26, misssense (oe): 0.56, synonymous (oe): 1.03 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000475805.5 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGACGGGCCTCTTCA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGACGGGCCTCTTCA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2556 / 2556 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 852 / 852 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2648 / 2648 | |||||||||||||
Position of start ATG in wt / mu cDNA | 93 / 93 | |||||||||||||
Last intron/exon boundary | 2663 | |||||||||||||
Theoretical NMD boundary in CDS | 2520 | |||||||||||||
Length of CDS | 2556 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1282 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.13 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | no data | |||||||||||||
Ensembl transcript ID | ENST00000706053.1 | |||||||||||||
Genbank transcript ID | NM_001374269 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRKGPAS PTRPAAPRPA EAPLLDL* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRKGPAS PTRPAAPRPA EAPLLDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2604 / 2604 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 868 / 868 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2658 / 2658 | |||||||||||||
Position of start ATG in wt / mu cDNA | 55 / 55 | |||||||||||||
Last intron/exon boundary | 2588 | |||||||||||||
Theoretical NMD boundary in CDS | 2483 | |||||||||||||
Length of CDS | 2604 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1244 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.37 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.38, LOF (oe): 0.26, misssense (oe): 0.56, synonymous (oe): 1.03 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000393594.7 | |||||||||||||
Genbank transcript ID | NM_001288738 (by similarity), NM_001288737 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | DYN1_HUMAN | AlphaMissense: transcript, gene | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features |
| |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGACGGGCCTCTTCA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGACGGGCCTCTTCA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDLAFE ATVKKQVQKL KEPSIKCVDM VVSELTATIR KCSEKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPRITISD P* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2556 / 2556 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 852 / 852 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2639 / 2639 | |||||||||||||
Position of start ATG in wt / mu cDNA | 84 / 84 | |||||||||||||
Last intron/exon boundary | 2654 | |||||||||||||
Theoretical NMD boundary in CDS | 2520 | |||||||||||||
Length of CDS | 2556 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1273 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.12 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.41, LOF (oe): 0.29, misssense (oe): 0.56, synonymous (oe): 1.01 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000634267.2 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSQPIGS GKSIPS* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQDEILV IRKGWLTINN IGIMKGGSKE YWFVLTAENL SWYKDDEEKE KKYMLSVDNL KLRDVEKGFM SSKHIFALFN TEQRNVYKDY RQLELACETQ EEVDSWKASF LRAGVYPERV GDKEKASETE ENGSDSFMHS MDPQLERQVE TIRNLVDSYM AIVNKTVRDL MPKTIMHLMI NNTKEFIFSE LLANLYSCGD QNTLMEESAE QAQRRDEMLR MYHALKEALS IIGDINTTTV STPMPPPVDD SWLQVQSVPA GRRSPTSSPT PQRRAPAVPP ARPGSRGPAP GPPPAGSALG GAPPVPSRPG ASPDPFGPPP QVPSRPNRAP PGVPSQPIGS GKSIPS* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2571 / 2571 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 857 / 857 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2571 / 2571 | |||||||||||||
Position of start ATG in wt / mu cDNA | 1 / 1 | |||||||||||||
Last intron/exon boundary | 2534 | |||||||||||||
Theoretical NMD boundary in CDS | 2483 | |||||||||||||
Length of CDS | 2571 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1190 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.34 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.39, LOF (oe): 0.28, misssense (oe): 0.57, synonymous (oe): 1.02 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000627061.2 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGACGGGCCTCTTCA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGACGGGCCTCTTCA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDLAFE ATVKKQLQQY PRLREEMERI VTTHIREREG RTKEQVMLLI DIELAYMNTN HEDFIGFANA QQRSNQMNKK KTSGNQDEIL VIRKGWLTIN NIGIMKGGSK EYWFVLTAEN LSWYKDDEEK EKKYMLSVDN LKLRDVEKGF MSSKHIFALF NTEQRNVYKD YRQLELACET QEEVDSWKAS FLRAGVYPER VGDKEKASET EENGSDSFMH SMDPQLERQV ETIRNLVDSY MAIVNKTVRD LMPKTIMHLM INNTKEFIFS ELLANLYSCG DQNTLMEESA EQAQRRDEML RMYHALKEAL SIIGDINTTT VSTPMPPPVD DSWLQVQSVP AGRRSPTSSP TPQRRAPAVP PARPGSRGPA PGPPPAGSAL GGAPPVPSRP GASPDPFGPP PQVPSRPNRA PPGVPSRSGQ ASPSRPESPR PPFDL* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDLAFE ATVKKQLQQY PRLREEMERI VTTHIREREG RTKEQVMLLI DIELAYMNTN HEDFIGFANA QQRSNQMNKK KTSGNQDEIL VIRKGWLTIN NIGIMKGGSK EYWFVLTAEN LSWYKDDEEK EKKYMLSVDN LKLRDVEKGF MSSKHIFALF NTEQRNVYKD YRQLELACET QEEVDSWKAS FLRAGVYPER VGDKEKASET EENGSDSFMH SMDPQLERQV ETIRNLVDSY MAIVNKTVRD LMPKTIMHLM INNTKEFIFS ELLANLYSCG DQNTLMEESA EQAQRRDEML RMYHALKEAL SIIGDINTTT VSTPMPPPVD DSWLQVQSVP AGRRSPTSSP TPQRRAPAVP PARPGSRGPA PGPPPAGSAL GGAPPVPSRP GASPDPFGPP PQVPSRPNRA PPGVPSRSGQ ASPSRPESPR PPFDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2508 / 2508 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 836 / 836 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2562 / 2562 | |||||||||||||
Position of start ATG in wt / mu cDNA | 55 / 55 | |||||||||||||
Last intron/exon boundary | 2501 | |||||||||||||
Theoretical NMD boundary in CDS | 2396 | |||||||||||||
Length of CDS | 2508 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1244 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.35 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr9:128222854G>A (GRCh38) | |||||||||||||
Gene symbol | DNM1 | |||||||||||||
Gene constraints | LOEUF: 0.39, LOF (oe): 0.28, misssense (oe): 0.58, synonymous (oe): 1.00 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000628346.2 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1190G>A g.31200G>A | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) |
| |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | 7 | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 9 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGGCACGTATTGGGGC | |||||||||||||
Altered gDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGGCACGTATTGGGGC | |||||||||||||
Original cDNA sequence snippet | TGCTATCAAGAATATCCATGGCATTAGAACGGGGCTGTTTA | |||||||||||||
Altered cDNA sequence snippet | TGCTATCAAGAATATCCATGACATTAGAACGGGGCTGTTTA | |||||||||||||
Wildtype AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHGIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQVIRKG WLTINNIGIM KGGSKEYWFV LTAENLSWYK DDEEKEKKYM LSVDNLKLRD VEKGFMSSKH IFALFNTEQR NVYKDYRQLE LACETQEEVD SWKASFLRAG VYPERVGDKE KASETEENGS DSFMHSMDPQ LERQVETIRN LVDSYMAIVN KTVRDLMPKT IMHLMINNTK EFIFSELLAN LYSCGDQNTL MEESAEQAQR RDEMLRMYHA LKEALSIIGD INTTTVSTPM PPPVDDSWLQ VQSVPAGRRS PTSSPTPQRR APAVPPARPG SRGPAPGPPP AGSALGGAPP VPSRPGASPD PFGPPPQVPS RPNRAPPGVP SRKGPASPTR PAAPRPAEAP LLDL* | |||||||||||||
Mutated AA sequence | MGNRGMEDLI PLVNRLQDAF SAIGQNADLD LPQIAVVGGQ SAGKSSVLEN FVGRDFLPRG SGIVTRRPLV LQLVNATTEY AEFLHCKGKK FTDFEEVRLE IEAETDRVTG TNKGISPVPI NLRVYSPHVL NLTLVDLPGM TKVPVGDQPP DIEFQIRDML MQFVTKENCL ILAVSPANSD LANSDALKVA KEVDPQGQRT IGVITKLDLM DEGTDARDVL ENKLLPLRRG YIGVVNRSQK DIDGKKDITA ALAAERKFFL SHPSYRHLAD RMGTPYLQKV LNQQLTNHIR DTLPGLRNKL QSQLLSIEKE VEEYKNFRPD DPARKTKALL QMVQQFAVDF EKRIEGSGDQ IDTYELSGGA RINRIFHERF PFELVKMEFD EKELRREISY AIKNIHDIRT GLFTPDMAFE TIVKKQVKKI REPCLKCVDM VISELISTVR QCTKKLQQYP RLREEMERIV TTHIREREGR TKEQVMLLID IELAYMNTNH EDFIGFANAQ QRSNQMNKKK TSGNQVIRKG WLTINNIGIM KGGSKEYWFV LTAENLSWYK DDEEKEKKYM LSVDNLKLRD VEKGFMSSKH IFALFNTEQR NVYKDYRQLE LACETQEEVD SWKASFLRAG VYPERVGDKE KASETEENGS DSFMHSMDPQ LERQVETIRN LVDSYMAIVN KTVRDLMPKT IMHLMINNTK EFIFSELLAN LYSCGDQNTL MEESAEQAQR RDEMLRMYHA LKEALSIIGD INTTTVSTPM PPPVDDSWLQ VQSVPAGRRS PTSSPTPQRR APAVPPARPG SRGPAPGPPP AGSALGGAPP VPSRPGASPD PFGPPPQVPS RPNRAPPGVP SRKGPASPTR PAAPRPAEAP LLDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2595 / 2595 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 865 / 865 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2669 / 2669 | |||||||||||||
Position of start ATG in wt / mu cDNA | 75 / 75 | |||||||||||||
Last intron/exon boundary | 2596 | |||||||||||||
Theoretical NMD boundary in CDS | 2471 | |||||||||||||
Length of CDS | 2595 | |||||||||||||
Coding sequence (CDS) position | 1190 | |||||||||||||
cDNA position | 1264 | |||||||||||||
gDNA position | 31200 | |||||||||||||
Chromosomal position | 128222854 | |||||||||||||
Speed | 0.37 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project