Transcript | Gene symbol | Prediction | Tree vote | Model | Prediction problem | Splice site change | Known ClinVar disease mutation | Potential ClinVar disease mutation | Amino acid changes | Variant type | dbSNP ID | Protein length | Features at a glance |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ENST00000355349(MANE Select) | MYH7 | Deleterious | 93|7 | simple_ | No | Deletion | Deletion of 1 or 2 AA |
| |||||
MYH7 | Deleterious | 97|3 | simple_ | No | Deletion | Deletion of 1 or 2 AA |
| ||||||
MYH7 | Deleterious | 97|3 | simple_ | No | Deletion | Deletion of 1 or 2 AA |
|
Analysed issue | Analysis result | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr14:23415779_23415781delCTC (GRCh38) | |||||||||||||||||||
Gene symbol | MYH7 | |||||||||||||||||||
Gene constraints | LOEUF: 0.64, LOF (oe): 0.56, misssense (oe): 0.63, synonymous (oe): 0.93 (gnomAD) | |||||||||||||||||||
Ensembl transcript ID | ENST00000355349.4 | |||||||||||||||||||
Genbank transcript ID | NM_000257 (exact from MANE) | |||||||||||||||||||
UniProt / AlphaMissense peptide | MYH7_HUMAN | AlphaMissense: transcript, gene | |||||||||||||||||||
Variant type | Deletion | |||||||||||||||||||
Gene region | CDS | |||||||||||||||||||
DNA changes | c.5005_5007delGAG g.19880_19882delGAG | |||||||||||||||||||
AA changes | deletion of 1 or 2 AA
| |||||||||||||||||||
Frameshift | No | |||||||||||||||||||
Length of protein | Deletion of 1 or 2 AA | |||||||||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||||||||
Variant DBs |
| |||||||||||||||||||
Protein conservation | ||||||||||||||||||||
Protein features |
| |||||||||||||||||||
Phylogenetic conservation |
| |||||||||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||||||||
Distance from splice site | N/A | |||||||||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||||||||
poly(A) signal | N/A | |||||||||||||||||||
AA sequence altered | Yes | |||||||||||||||||||
Chromosome | 14 | |||||||||||||||||||
Strand | -1 | |||||||||||||||||||
Original gDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered gDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Original cDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered cDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Wildtype AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKEN IAIVERRNNL LQAELEELRA VVEQTERSRK LAEQELIETS ERVQLLHSQN TSLINQKKKM DADLSQLQTE VEEAVQECRN AEEKAKKAIT DAAMMAEELK KEQDTSAHLE RMKKNMEQTI KDLQHRLDEA EQIALKGGKK QLQKLEARVR ELENELEAEQ KRNAESVKGM RKSERRIKEL TYQTEEDRKN LLRLQDLVDK LQLKVKAYKR QAEEAEEQAN TNLSKFRKVQ HELDEAEERA DIAESQVNKL RAKSRDIGTK GLNEE* | |||||||||||||||||||
Mutated AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKNI AIVERRNNLL QAELEELRAV VEQTERSRKL AEQELIETSE RVQLLHSQNT SLINQKKKMD ADLSQLQTEV EEAVQECRNA EEKAKKAITD AAMMAEELKK EQDTSAHLER MKKNMEQTIK DLQHRLDEAE QIALKGGKKQ LQKLEARVRE LENELEAEQK RNAESVKGMR KSERRIKELT YQTEEDRKNL LRLQDLVDKL QLKVKAYKRQ AEEAEEQANT NLSKFRKVQH ELDEAEERAD IAESQVNKLR AKSRDIGTKG LNEE* | |||||||||||||||||||
Position of stopcodon in wt / mu CDS | 5808 / 5805 | |||||||||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 1936 / 1935 | |||||||||||||||||||
Position of stopcodon in wt / mu cDNA | 5913 / 5910 | |||||||||||||||||||
Position of start ATG in wt / mu cDNA | 106 / 106 | |||||||||||||||||||
Last intron/exon boundary | 5895 | |||||||||||||||||||
Theoretical NMD boundary in CDS | 5739 | |||||||||||||||||||
Length of CDS | 5808 | |||||||||||||||||||
Coding sequence (CDS) position | 5004 / 5008 | |||||||||||||||||||
cDNA position | 5109 / 5113 | |||||||||||||||||||
gDNA position | 19879 / 19883 | |||||||||||||||||||
Chromosomal position | 23415778 / 23415782 | |||||||||||||||||||
Speed | 0.06 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr14:23415779_23415781delCTC (GRCh38) | |||||||||||||||||||
Gene symbol | MYH7 | |||||||||||||||||||
Gene constraints | no data | |||||||||||||||||||
Ensembl transcript ID | ENST00000713768.1 | |||||||||||||||||||
Genbank transcript ID | ||||||||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||||||||
Variant type | Deletion | |||||||||||||||||||
Gene region | CDS | |||||||||||||||||||
DNA changes | c.5005_5007delGAG g.19880_19882delGAG | |||||||||||||||||||
AA changes | deletion of 1 or 2 AA
| |||||||||||||||||||
Frameshift | No | |||||||||||||||||||
Length of protein | Deletion of 1 or 2 AA | |||||||||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||||||||
Variant DBs |
| |||||||||||||||||||
Protein conservation | ||||||||||||||||||||
Protein features | N/A | |||||||||||||||||||
Phylogenetic conservation |
| |||||||||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||||||||
Distance from splice site | N/A | |||||||||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||||||||
poly(A) signal | N/A | |||||||||||||||||||
AA sequence altered | Yes | |||||||||||||||||||
Chromosome | 14 | |||||||||||||||||||
Strand | -1 | |||||||||||||||||||
Original gDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered gDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Original cDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered cDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Wildtype AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKEN IAIVERRNNL LQAELEELRA VVEQTERSRK LAEQELIETS ERVQLLHSQN TSLINQKKKM DADLSQLQTE VEEAVQECRN AEEKAKKAIT DAAMMAEELK KEQDTSAHLE RMKKNMEQTI KDLQHRLDEA EQIALKGGKK QLQKLEARVR ELENELEAEQ KRNAESVKGM RKSERRIKEL TYQTEEDRKN LLRLQDLVDK LQLKVKAYKR QAEEAEEQAN TNLSKFRKVQ HELDEAEERA DIAESQVNKL RAKSRDIGTK RCGFTMLARL VLNS* | |||||||||||||||||||
Mutated AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKNI AIVERRNNLL QAELEELRAV VEQTERSRKL AEQELIETSE RVQLLHSQNT SLINQKKKMD ADLSQLQTEV EEAVQECRNA EEKAKKAITD AAMMAEELKK EQDTSAHLER MKKNMEQTIK DLQHRLDEAE QIALKGGKKQ LQKLEARVRE LENELEAEQK RNAESVKGMR KSERRIKELT YQTEEDRKNL LRLQDLVDKL QLKVKAYKRQ AEEAEEQANT NLSKFRKVQH ELDEAEERAD IAESQVNKLR AKSRDIGTKR CGFTMLARLV LNS* | |||||||||||||||||||
Position of stopcodon in wt / mu CDS | 5835 / 5832 | |||||||||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 1945 / 1944 | |||||||||||||||||||
Position of stopcodon in wt / mu cDNA | 5940 / 5937 | |||||||||||||||||||
Position of start ATG in wt / mu cDNA | 106 / 106 | |||||||||||||||||||
Last intron/exon boundary | 5971 | |||||||||||||||||||
Theoretical NMD boundary in CDS | 5815 | |||||||||||||||||||
Length of CDS | 5835 | |||||||||||||||||||
Coding sequence (CDS) position | 5004 / 5008 | |||||||||||||||||||
cDNA position | 5109 / 5113 | |||||||||||||||||||
gDNA position | 19879 / 19883 | |||||||||||||||||||
Chromosomal position | 23415778 / 23415782 | |||||||||||||||||||
Speed | 0.09 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr14:23415779_23415781delCTC (GRCh38) | |||||||||||||||||||
Gene symbol | MYH7 | |||||||||||||||||||
Gene constraints | no data | |||||||||||||||||||
Ensembl transcript ID | ENST00000713769.1 | |||||||||||||||||||
Genbank transcript ID | NM_001407004 (by similarity) | |||||||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||||||||
Variant type | Deletion | |||||||||||||||||||
Gene region | CDS | |||||||||||||||||||
DNA changes | c.5005_5007delGAG g.19880_19882delGAG | |||||||||||||||||||
AA changes | deletion of 1 or 2 AA
| |||||||||||||||||||
Frameshift | No | |||||||||||||||||||
Length of protein | Deletion of 1 or 2 AA | |||||||||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||||||||
Variant DBs |
| |||||||||||||||||||
Protein conservation | ||||||||||||||||||||
Protein features | N/A | |||||||||||||||||||
Phylogenetic conservation |
| |||||||||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||||||||
Distance from splice site | N/A | |||||||||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||||||||
poly(A) signal | N/A | |||||||||||||||||||
AA sequence altered | Yes | |||||||||||||||||||
Chromosome | 14 | |||||||||||||||||||
Strand | -1 | |||||||||||||||||||
Original gDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered gDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Original cDNA sequence snippet | GTGCCAACGACGACCTGAAGGAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Altered cDNA sequence snippet | GTGCCAACGACGACCTGAAGAACATCGCCATCGTGGAGCG | |||||||||||||||||||
Wildtype AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKEN IAIVERRNNL LQAELEELRA VVEQTERSRK LAEQELIETS ERVQLLHSQN TSLINQKKKM DADLSQLQTE VEEAVQECRN AEEKAKKAIT DAAMMAEELK KEQDTSAHLE RMKKNMEQTI KDLQHRLDEA EQIALKGGKK QLQKLEARVR ELENELEAEQ KRNAESVKGM RKSERRIKEL TYQTEEDRKN LLRLQDLVDK LQLKVKAYKR QAEEAEEQAN TNLSKFRKVQ HELDEAEERA DIAESQVNKL RAKSRDIGTK GLNEE* | |||||||||||||||||||
Mutated AA sequence | MGDSEMAVFG AAAPYLRKSE KERLEAQTRP FDLKKDVFVP DDKQEFVKAK IVSREGGKVT AETEYGKTVT VKEDQVMQQN PPKFDKIEDM AMLTFLHEPA VLYNLKDRYG SWMIYTYSGL FCVTVNPYKW LPVYTPEVVA AYRGKKRSEA PPHIFSISDN AYQYMLTDRE NQSILITGES GAGKTVNTKR VIQYFAVIAA IGDRSKKDQS PGKGTLEDQI IQANPALEAF GNAKTVRNDN SSRFGKFIRI HFGATGKLAS ADIETYLLEK SRVIFQLKAE RDYHIFYQIL SNKKPELLDM LLITNNPYDY AFISQGETTV ASIDDAEELM ATDNAFDVLG FTSEEKNSMY KLTGAIMHFG NMKFKLKQRE EQAEPDGTEE ADKSAYLMGL NSADLLKGLC HPRVKVGNEY VTKGQNVQQV IYATGALAKA VYERMFNWMV TRINATLETK QPRQYFIGVL DIAGFEIFDF NSFEQLCINF TNEKLQQFFN HHMFVLEQEE YKKEGIEWTF IDFGMDLQAC IDLIEKPMGI MSILEEECMF PKATDMTFKA KLFDNHLGKS ANFQKPRNIK GKPEAHFSLI HYAGIVDYNI IGWLQKNKDP LNETVVGLYQ KSSLKLLSTL FANYAGADAP IEKGKGKAKK GSSFQTVSAL HRENLNKLMT NLRSTHPHFV RCIIPNETKS PGVMDNPLVM HQLRCNGVLE GIRICRKGFP NRILYGDFRQ RYRILNPAAI PEGQFIDSRK GAEKLLSSLD IDHNQYKFGH TKVFFKAGLL GLLEEMRDER LSRIITRIQA QSRGVLARME YKKLLERRDS LLVIQWNIRA FMGVKNWPWM KLYFKIKPLL KSAEREKEMA SMKEEFTRLK EALEKSEARR KELEEKMVSL LQEKNDLQLQ VQAEQDNLAD AEERCDQLIK NKIQLEAKVK EMNERLEDEE EMNAELTAKK RKLEDECSEL KRDIDDLELT LAKVEKEKHA TENKVKNLTE EMAGLDEIIA KLTKEKKALQ EAHQQALDDL QAEEDKVNTL TKAKVKLEQQ VDDLEGSLEQ EKKVRMDLER AKRKLEGDLK LTQESIMDLE NDKQQLDERL KKKDFELNAL NARIEDEQAL GSQLQKKLKE LQARIEELEE ELEAERTARA KVEKLRSDLS RELEEISERL EEAGGATSVQ IEMNKKREAE FQKMRRDLEE ATLQHEATAA ALRKKHADSV AELGEQIDNL QRVKQKLEKE KSEFKLELDD VTSNMEQIIK AKANLEKMCR TLEDQMNEHR SKAEETQRSV NDLTSQRAKL QTENGELSRQ LDEKEALISQ LTRGKLTYTQ QLEDLKRQLE EEVKAKNALA HALQSARHDC DLLREQYEEE TEAKAELQRV LSKANSEVAQ WRTKYETDAI QRTEELEEAK KKLAQRLQEA EEAVEAVNAK CSSLEKTKHR LQNEIEDLMV DVERSNAAAA ALDKKQRNFD KILAEWKQKY EESQSELESS QKEARSLSTE LFKLKNAYEE SLEHLETFKR ENKNLQEEIS DLTEQLGSSG KTIHELEKVR KQLEAEKMEL QSALEEAEAS LEHEEGKILR AQLEFNQIKA EIERKLAEKD EEMEQAKRNH LRVVDSLQTS LDAETRSRNE ALRVKKKMEG DLNEMEIQLS HANRMAAEAQ KQVKSLQSLL KDTQIQLDDA VRANDDLKNI AIVERRNNLL QAELEELRAV VEQTERSRKL AEQELIETSE RVQLLHSQNT SLINQKKKMD ADLSQLQTEV EEAVQECRNA EEKAKKAITD AAMMAEELKK EQDTSAHLER MKKNMEQTIK DLQHRLDEAE QIALKGGKKQ LQKLEARVRE LENELEAEQK RNAESVKGMR KSERRIKELT YQTEEDRKNL LRLQDLVDKL QLKVKAYKRQ AEEAEEQANT NLSKFRKVQH ELDEAEERAD IAESQVNKLR AKSRDIGTKG LNEE* | |||||||||||||||||||
Position of stopcodon in wt / mu CDS | 5808 / 5805 | |||||||||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 1936 / 1935 | |||||||||||||||||||
Position of stopcodon in wt / mu cDNA | 5857 / 5854 | |||||||||||||||||||
Position of start ATG in wt / mu cDNA | 50 / 50 | |||||||||||||||||||
Last intron/exon boundary | 5839 | |||||||||||||||||||
Theoretical NMD boundary in CDS | 5739 | |||||||||||||||||||
Length of CDS | 5808 | |||||||||||||||||||
Coding sequence (CDS) position | 5004 / 5008 | |||||||||||||||||||
cDNA position | 5053 / 5057 | |||||||||||||||||||
gDNA position | 19879 / 19883 | |||||||||||||||||||
Chromosomal position | 23415778 / 23415782 | |||||||||||||||||||
Speed | 0.08 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project