Transcript | Gene symbol | Prediction | Tree vote | Model | Prediction problem | Splice site change | Known ClinVar disease mutation | Potential ClinVar disease mutation | Amino acid changes | Variant type | dbSNP ID | Protein length | Features at a glance |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
KCNQ1 | Benign | 0|200 | without_ | No | Single base exchange | N/A |
| ||||||
KCNQ1 | Benign | 1|199 | without_ | No | Single base exchange | N/A |
| ||||||
KCNQ1 | Benign | 2|198 | without_ | No | Single base exchange | N/A |
| ||||||
KCNQ1 | Benign | 3|197 | without_ | No | Single base exchange | N/A |
| ||||||
ENST00000155840(MANE Select) | KCNQ1 | Benign | 8|192 | without_ | No | Single base exchange | N/A |
| |||||
KCNQ1 | Benign | 18|182 | without_ | No | Single base exchange | N/A |
|
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | no data | |||||||||||||
Ensembl transcript ID | ENST00000713725.1 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.1654-11803A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWME IVLVVFFGTE YVVRLWSAGC RSKYVGLWGR LRFARKPISI IDLIVVVASM VVLCVGSKGQ VFATSAIRGI RFLQILRMLH VDRQGGTWRL LGSVVFIHRQ VTVTTIGYGD KVPQTWVGKT IASCFSVFAI SFFALPAGIL GSGFALKVQQ KQRQKHFNRQ IPAAASLIQT AWRCYAAENP DSSTWKIYIR KAPRSHTLLS PSPKPKKSVV VKKKKFKLDK DNGVTPGEKM LTVPHITCDP PEERRLDHFS VDGYDSSVRK SPTLLEVSMP HFMRTNSFAE DLDLEGETLL TPITHISQLR EHHRATIKVI RRMQYFVAKK KFQQARKPYD VRDVIEQYSQ GHLNLMVRIK ELQRRLDQSI GKPSLFISVS EKSKDRGSNT IGARLNRVED KVTQLDQRLA LITDMLHQLL SLHGGSTPGS GGPPREGGAH ITQPCGSGGS VDPELFLPSN TLPTYEQLTV PRRGPDEGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 206 / 206 | |||||||||||||
Last intron/exon boundary | 1858 | |||||||||||||
Theoretical NMD boundary in CDS | 1602 | |||||||||||||
Length of CDS | 1890 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | LOEUF: 0.84, LOF (oe): 0.60, misssense (oe): 0.81, synonymous (oe): 1.04 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000646564.2 | |||||||||||||
Genbank transcript ID | NM_001406838 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.1255-3752A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWMV TVTTIGYGDK VPQTWVGKTI ASCFSVFAIS FFALPATAWR CYAAENPDSS TWKIYIRKAP RSHTLLSPSP KPKKSVVVKK KKFKLDKDNG VTPGEKMLTV PHITCDPPEE RRLDHFSVDG YDSSVRKSPT LLEVSMPHFM RTNSFAEDLD LEGETLLTPI THISQLREHH RATIKVIRRM QYFVAKKKFQ QARKPYDVRD VIEQYSQGHL NLMVRIKELQ RRLDQSIGKP SLFISVSEKS KDRGSNTIGA RLNRVEDKST KKRPSPGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 92 / 92 | |||||||||||||
Last intron/exon boundary | 1345 | |||||||||||||
Theoretical NMD boundary in CDS | 1203 | |||||||||||||
Length of CDS | 1287 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | LOEUF: 1.93, LOF (oe): 1.48, misssense (oe): 1.20, synonymous (oe): 1.45 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000526095.2 | |||||||||||||
Genbank transcript ID | NM_001406839 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.199-11803A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MGLHSWQCGQ LRQPPRALRG QRWRAWSRME PRSPAAAMPG HRTTPEKSKD RGSNTIGARL NRVEDKVTQL DQRLALITDM LHQLLSLHGG STPGSGGPPR EGGAHITQPC GSGGSVDPEL FLPSNTLPTY EQLTVPRRGP DEGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 104 / 104 | |||||||||||||
Last intron/exon boundary | 301 | |||||||||||||
Theoretical NMD boundary in CDS | 147 | |||||||||||||
Length of CDS | 435 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | LOEUF: 0.94, LOF (oe): 0.74, misssense (oe): 0.83, synonymous (oe): 1.13 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000335475.6 | |||||||||||||
Genbank transcript ID | NM_181798 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.1414-11803A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MDFLIVLVCL IFSVLSTIEQ YAALATGTLF WMEIVLVVFF GTEYVVRLWS AGCRSKYVGL WGRLRFARKP ISIIDLIVVV ASMVVLCVGS KGQVFATSAI RGIRFLQILR MLHVDRQGGT WRLLGSVVFI HRQELITTLY IGFLGLIFSS YFVYLAEKDA VNESGRVEFG SYADALWWGV VTVTTIGYGD KVPQTWVGKT IASCFSVFAI SFFALPAGIL GSGFALKVQQ KQRQKHFNRQ IPAAASLIQT AWRCYAAENP DSSTWKIYIR KAPRSHTLLS PSPKPKKSVV VKKKKFKLDK DNGVTPGEKM LTVPHITCDP PEERRLDHFS VDGYDSSVRK SPTLLEVSMP HFMRTNSFAE DLDLEGETLL TPITHISQLR EHHRATIKVI RRMQYFVAKK KFQQARKPYD VRDVIEQYSQ GHLNLMVRIK ELQRRLDQSI GKPSLFISVS EKSKDRGSNT IGARLNRVED KVTQLDQRLA LITDMLHQLL SLHGGSTPGS GGPPREGGAH ITQPCGSGGS VDPELFLPSN TLPTYEQLTV PRRGPDEGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 270 / 270 | |||||||||||||
Last intron/exon boundary | 1682 | |||||||||||||
Theoretical NMD boundary in CDS | 1362 | |||||||||||||
Length of CDS | 1650 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | LOEUF: 0.92, LOF (oe): 0.72, misssense (oe): 0.92, synonymous (oe): 1.21 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000155840.12 | |||||||||||||
Genbank transcript ID | NM_000218 (exact from MANE), NM_001406837 (by similarity), NM_001406836 (by similarity) | |||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.1795-11803A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWME IVLVVFFGTE YVVRLWSAGC RSKYVGLWGR LRFARKPISI IDLIVVVASM VVLCVGSKGQ VFATSAIRGI RFLQILRMLH VDRQGGTWRL LGSVVFIHRQ ELITTLYIGF LGLIFSSYFV YLAEKDAVNE SGRVEFGSYA DALWWGVVTV TTIGYGDKVP QTWVGKTIAS CFSVFAISFF ALPAGILGSG FALKVQQKQR QKHFNRQIPA AASLIQTAWR CYAAENPDSS TWKIYIRKAP RSHTLLSPSP KPKKSVVVKK KKFKLDKDNG VTPGEKMLTV PHITCDPPEE RRLDHFSVDG YDSSVRKSPT LLEVSMPHFM RTNSFAEDLD LEGETLLTPI THISQLREHH RATIKVIRRM QYFVAKKKFQ QARKPYDVRD VIEQYSQGHL NLMVRIKELQ RRLDQSIGKP SLFISVSEKS KDRGSNTIGA RLNRVEDKVT QLDQRLALIT DMLHQLLSLH GGSTPGSGGP PREGGAHITQ PCGSGGSVDP ELFLPSNTLP TYEQLTVPRR GPDEGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 92 / 92 | |||||||||||||
Last intron/exon boundary | 1885 | |||||||||||||
Theoretical NMD boundary in CDS | 1743 | |||||||||||||
Length of CDS | 2031 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr11:2835964A>C (GRCh38) | |||||||||||||
Gene symbol | KCNQ1 | |||||||||||||
Gene constraints | LOEUF: 0.89, LOF (oe): 0.57, misssense (oe): 0.75, synonymous (oe): 1.07 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000496887.7 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | intron | |||||||||||||
DNA changes | c.1438-11803A>C g.391311A>C | |||||||||||||
AA changes | N/A | |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | N/A | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | N/A | |||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | N/A | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | N/A | |||||||||||||
Chromosome | 11 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA | |||||||||||||
Altered gDNA sequence snippet | CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA | |||||||||||||
Original cDNA sequence snippet | N/A | |||||||||||||
Altered cDNA sequence snippet | N/A | |||||||||||||
Wildtype AA sequence | MTRAGLSSTR RPVLARTHVQ GRVYNFLERP TGWKCFVYHF AVFLIVLVCL IFSVLSTIEQ YAALATGTLF WMEIVLVVFF GTEYVVRLWS AGCRSKYVGL WGRLRFARKP ISIIDLIVVV ASMVVLCVGS KGQVFATSAI RGIRFLQILR MLHVDRQGGT WRLLGSVVFI HRQELITTLY IGFLGLIFSS YFVYLAEKDA VNESGRVEFG SYADALWWGV VTVTTIGYGD KVPQTWVGKT IASCFSVFAI SFFALPATAW RCYAAENPDS STWKIYIRKA PRSHTLLSPS PKPKKSVVVK KKKFKLDKDN GVTPGEKMLT VPHITCDPPE ERRLDHFSVD GYDSSVRKSP TLLEVSMPHF MRTNSFAEDL DLEGETLLTP ITHISQLREH HRATIKVIRR MQYFVAKKKF QQARKPYDVR DVIEQYSQGH LNLMVRIKEL QRRLDQSIGK PSLFISVSEK SKDRGSNTIG ARLNRVEDKV TQLDQRLALI TDMLHQLLSL HGGSTPGSGG PPREGGAHIT QPCGSGGSVD PELFLPSNTL PTYEQLTVPR RGPDEGS* | |||||||||||||
Mutated AA sequence | ||||||||||||||
Position of stopcodon in wt / mu CDS | N/A | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
Position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
Position of start ATG in wt / mu cDNA | 33 / 33 | |||||||||||||
Last intron/exon boundary | 1469 | |||||||||||||
Theoretical NMD boundary in CDS | 1386 | |||||||||||||
Length of CDS | 1674 | |||||||||||||
Coding sequence (CDS) position | N/A | |||||||||||||
cDNA position | N/A | |||||||||||||
gDNA position | 391311 | |||||||||||||
Chromosomal position | 2835964 | |||||||||||||
Speed | 0.02 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project