Yum, tasty mutations...

MutationT@ster 2025

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Input seems to be ok - now mapping the variant to the different transcripts...
Querying Taster for transcript #1: ENST00000526095
Querying Taster for transcript #2: ENST00000335475
Querying Taster for transcript #3: ENST00000155840
Querying Taster for transcript #4: ENST00000646564
Querying Taster for transcript #5: ENST00000713725
Querying Taster for transcript #6: ENST00000496887
MT speed 0.12 s - this script 2.489124 s

Transcript summary:

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_5_ENST00000713725

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Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 0|200 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints no data
Ensembl transcript ID ENST00000713725.1
Genbank transcript ID
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.1654-11803A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG
PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW
KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWME IVLVVFFGTE YVVRLWSAGC
RSKYVGLWGR LRFARKPISI IDLIVVVASM VVLCVGSKGQ VFATSAIRGI RFLQILRMLH
VDRQGGTWRL LGSVVFIHRQ VTVTTIGYGD KVPQTWVGKT IASCFSVFAI SFFALPAGIL
GSGFALKVQQ KQRQKHFNRQ IPAAASLIQT AWRCYAAENP DSSTWKIYIR KAPRSHTLLS
PSPKPKKSVV VKKKKFKLDK DNGVTPGEKM LTVPHITCDP PEERRLDHFS VDGYDSSVRK
SPTLLEVSMP HFMRTNSFAE DLDLEGETLL TPITHISQLR EHHRATIKVI RRMQYFVAKK
KFQQARKPYD VRDVIEQYSQ GHLNLMVRIK ELQRRLDQSI GKPSLFISVS EKSKDRGSNT
IGARLNRVED KVTQLDQRLA LITDMLHQLL SLHGGSTPGS GGPPREGGAH ITQPCGSGGS
VDPELFLPSN TLPTYEQLTV PRRGPDEGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 206 / 206
Last intron/exon boundary 1858
Theoretical NMD boundary in CDS 1602
Length of CDS 1890
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_4_ENST00000646564

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Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 1|199 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints LOEUF: 0.84, LOF (oe): 0.60, misssense (oe): 0.81, synonymous (oe): 1.04 ? (gnomAD)
Ensembl transcript ID ENST00000646564.2
Genbank transcript ID NM_001406838 (by similarity)
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.1255-3752A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG
PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW
KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWMV TVTTIGYGDK VPQTWVGKTI
ASCFSVFAIS FFALPATAWR CYAAENPDSS TWKIYIRKAP RSHTLLSPSP KPKKSVVVKK
KKFKLDKDNG VTPGEKMLTV PHITCDPPEE RRLDHFSVDG YDSSVRKSPT LLEVSMPHFM
RTNSFAEDLD LEGETLLTPI THISQLREHH RATIKVIRRM QYFVAKKKFQ QARKPYDVRD
VIEQYSQGHL NLMVRIKELQ RRLDQSIGKP SLFISVSEKS KDRGSNTIGA RLNRVEDKST
KKRPSPGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 92 / 92
Last intron/exon boundary 1345
Theoretical NMD boundary in CDS 1203
Length of CDS 1287
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_1_ENST00000526095

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Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 2|198 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints LOEUF: 1.93, LOF (oe): 1.48, misssense (oe): 1.20, synonymous (oe): 1.45 ? (gnomAD)
Ensembl transcript ID ENST00000526095.2
Genbank transcript ID NM_001406839 (by similarity)
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.199-11803A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MGLHSWQCGQ LRQPPRALRG QRWRAWSRME PRSPAAAMPG HRTTPEKSKD RGSNTIGARL
NRVEDKVTQL DQRLALITDM LHQLLSLHGG STPGSGGPPR EGGAHITQPC GSGGSVDPEL
FLPSNTLPTY EQLTVPRRGP DEGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 104 / 104
Last intron/exon boundary 301
Theoretical NMD boundary in CDS 147
Length of CDS 435
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_2_ENST00000335475

Back to summary table

Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 3|197 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints LOEUF: 0.94, LOF (oe): 0.74, misssense (oe): 0.83, synonymous (oe): 1.13 ? (gnomAD)
Ensembl transcript ID ENST00000335475.6
Genbank transcript ID NM_181798 (by similarity)
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.1414-11803A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MDFLIVLVCL IFSVLSTIEQ YAALATGTLF WMEIVLVVFF GTEYVVRLWS AGCRSKYVGL
WGRLRFARKP ISIIDLIVVV ASMVVLCVGS KGQVFATSAI RGIRFLQILR MLHVDRQGGT
WRLLGSVVFI HRQELITTLY IGFLGLIFSS YFVYLAEKDA VNESGRVEFG SYADALWWGV
VTVTTIGYGD KVPQTWVGKT IASCFSVFAI SFFALPAGIL GSGFALKVQQ KQRQKHFNRQ
IPAAASLIQT AWRCYAAENP DSSTWKIYIR KAPRSHTLLS PSPKPKKSVV VKKKKFKLDK
DNGVTPGEKM LTVPHITCDP PEERRLDHFS VDGYDSSVRK SPTLLEVSMP HFMRTNSFAE
DLDLEGETLL TPITHISQLR EHHRATIKVI RRMQYFVAKK KFQQARKPYD VRDVIEQYSQ
GHLNLMVRIK ELQRRLDQSI GKPSLFISVS EKSKDRGSNT IGARLNRVED KVTQLDQRLA
LITDMLHQLL SLHGGSTPGS GGPPREGGAH ITQPCGSGGS VDPELFLPSN TLPTYEQLTV
PRRGPDEGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 270 / 270
Last intron/exon boundary 1682
Theoretical NMD boundary in CDS 1362
Length of CDS 1650
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_3_ENST00000155840

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Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 8|192 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints LOEUF: 0.92, LOF (oe): 0.72, misssense (oe): 0.92, synonymous (oe): 1.21 ? (gnomAD)
Ensembl transcript ID ENST00000155840.12
Genbank transcript ID NM_000218 (exact from MANE), NM_001406837 (by similarity), NM_001406836 (by similarity)
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.1795-11803A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MAAASSPPRA ERKRWGWGRL PGARRGSAGL AKKCPFSLEL AEGGPAGGAL YAPIAPGAPG
PAPPASPAAP AAPPVASDLG PRPPVSLDPR VSIYSTRRPV LARTHVQGRV YNFLERPTGW
KCFVYHFAVF LIVLVCLIFS VLSTIEQYAA LATGTLFWME IVLVVFFGTE YVVRLWSAGC
RSKYVGLWGR LRFARKPISI IDLIVVVASM VVLCVGSKGQ VFATSAIRGI RFLQILRMLH
VDRQGGTWRL LGSVVFIHRQ ELITTLYIGF LGLIFSSYFV YLAEKDAVNE SGRVEFGSYA
DALWWGVVTV TTIGYGDKVP QTWVGKTIAS CFSVFAISFF ALPAGILGSG FALKVQQKQR
QKHFNRQIPA AASLIQTAWR CYAAENPDSS TWKIYIRKAP RSHTLLSPSP KPKKSVVVKK
KKFKLDKDNG VTPGEKMLTV PHITCDPPEE RRLDHFSVDG YDSSVRKSPT LLEVSMPHFM
RTNSFAEDLD LEGETLLTPI THISQLREHH RATIKVIRRM QYFVAKKKFQ QARKPYDVRD
VIEQYSQGHL NLMVRIKELQ RRLDQSIGKP SLFISVSEKS KDRGSNTIGA RLNRVEDKVT
QLDQRLALIT DMLHQLLSLH GGSTPGSGGP PREGGAHITQ PCGSGGSVDP ELFLPSNTLP
TYEQLTVPRR GPDEGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 92 / 92
Last intron/exon boundary 1885
Theoretical NMD boundary in CDS 1743
Length of CDS 2031
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

Back to summary table

Yum, tasty mutations...

MutationT@ster 2025

Variant:

11:2835964A>C_6_ENST00000496887

Back to summary table

Prediction:

BenignPermalink

Summary:

  • Model: without_aae
  • Tree vote: 18|182 (del | benign) ?
  • Automatic classification due to gnomAD
Analysed issue Analysis result
Variant Chr11:2835964A>C (GRCh38)
Gene symbol KCNQ1
Gene constraints LOEUF: 0.89, LOF (oe): 0.57, misssense (oe): 0.75, synonymous (oe): 1.07 ? (gnomAD)
Ensembl transcript ID ENST00000496887.7
Genbank transcript ID
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region intron
DNA changes c.1438-11803A>C
g.391311A>C
AA changes N/A
Frameshift No
Length of protein N/A
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs2237895
gnomADhomozygous (C/C)heterozygousallele carriers
10273>32000>32000
Protein conservation N/A
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)-1.4130
-3.0350
(flanking)-0.0010.001
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? N/A
poly(A) signal N/A
AA sequence altered N/A
Chromosome 11
Strand 1
Original gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCAGGGGTCGGGGACAGGTGGGA
Altered gDNA sequence snippet CGGGCCCGGTCAGTGGTCCCCGGGGTCGGGGACAGGTGGGA
Original cDNA sequence snippet N/A
Altered cDNA sequence snippet N/A
Wildtype AA sequence MTRAGLSSTR RPVLARTHVQ GRVYNFLERP TGWKCFVYHF AVFLIVLVCL IFSVLSTIEQ
YAALATGTLF WMEIVLVVFF GTEYVVRLWS AGCRSKYVGL WGRLRFARKP ISIIDLIVVV
ASMVVLCVGS KGQVFATSAI RGIRFLQILR MLHVDRQGGT WRLLGSVVFI HRQELITTLY
IGFLGLIFSS YFVYLAEKDA VNESGRVEFG SYADALWWGV VTVTTIGYGD KVPQTWVGKT
IASCFSVFAI SFFALPATAW RCYAAENPDS STWKIYIRKA PRSHTLLSPS PKPKKSVVVK
KKKFKLDKDN GVTPGEKMLT VPHITCDPPE ERRLDHFSVD GYDSSVRKSP TLLEVSMPHF
MRTNSFAEDL DLEGETLLTP ITHISQLREH HRATIKVIRR MQYFVAKKKF QQARKPYDVR
DVIEQYSQGH LNLMVRIKEL QRRLDQSIGK PSLFISVSEK SKDRGSNTIG ARLNRVEDKV
TQLDQRLALI TDMLHQLLSL HGGSTPGSGG PPREGGAHIT QPCGSGGSVD PELFLPSNTL
PTYEQLTVPR RGPDEGS*
Mutated AA sequence
Position of stopcodon in wt / mu CDS N/A
Position (AA) of stopcodon in wt / mu AA sequence N/A
Position of stopcodon in wt / mu cDNA N/A
Position of start ATG in wt / mu cDNA 33 / 33
Last intron/exon boundary 1469
Theoretical NMD boundary in CDS 1386
Length of CDS 1674
Coding sequence (CDS) position N/A
cDNA position N/A
gDNA position 391311
Chromosomal position 2835964
Speed 0.02 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

Back to summary table