Yum, tasty mutations...

MutationT@ster 2025

NEVER press reload or F5 - unless you want to start from the very beginning.
Input seems to be ok - now mapping the variant to the different transcripts...
Querying Taster for transcript #1: ENST00000366578
Querying Taster for transcript #2: ENST00000542672
Querying Taster for transcript #3: ENST00000682015
MT speed 0.15 s - this script 2.61657 s

Transcript summary:

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Yum, tasty mutations...

MutationT@ster 2025

Variant:

1:236747744C>T_1_ENST00000366578

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Prediction:

DeleteriousPermalink

Summary:

  • Model: simple_aae
  • Tree vote: 77|23 (del | benign) ?
Analysed issue Analysis result
Variant Chr1:236747744C>T (GRCh38)
Gene symbol ACTN2
Gene constraints LOEUF: 0.43, LOF (oe): 0.33, misssense (oe): 0.82, synonymous (oe): 0.93 ? (gnomAD)
Ensembl transcript ID ENST00000366578.6
Genbank transcript ID NM_001103 (exact from MANE)
UniProt / AlphaMissense peptide ACTN2_HUMAN | AlphaMissense: transcript, gene
Variant type Single base exchange
Gene region CDS
DNA changes c.1484C>T
g.83604C>T
AA changes
AAE:T495M?
Score:81
Frameshift No
Length of protein Normal
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs200248944
gnomADhomozygous (T/T)heterozygousallele carriers
1699700
Protein conservation
SpeciesMatchGeneAAAlignment
Human      495QKICDQWDRLGTLTQKRREALERM
mutated  not conserved    495QKICDQWDRLGMLTQKRREALER
Ptroglodytes  all identical    495QKICDQWDRLGTLTQKRREALER
Mmulatta  all identical    495QKICDQWDRLGTLTQKRREALER
Fcatus  all identical    511QKICDQWDRLGTLTQKRREALER
Mmusculus  all identical    495QKICDQWDRLGTLTQKRREALER
Ggallus  all identical    498QKICDQWDSLGTLTQKRREALER
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  all identical    495QKICDQWDRLGTLTQKRREALER
Protein features
Start (aa)End (aa)FeatureDetails 
1894CHAINlost
401506REPEATSpectrinlost
476536HELIXlost
Phylogenetic conservation
PhyloPPhastCons
(flanking)6.311
5.9611
(flanking)-1.1860.002
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? No
poly(A) signal N/A
AA sequence altered Yes
Chromosome 1
Strand 1
Original gDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered gDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Original cDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered cDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Wildtype AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP
DERAIMTYVS CFYHAFAGAE QAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT
IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF
MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK
EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN
DRCQKICDQW DRLGTLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ
DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS
TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI
ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI
RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA
CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS
DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL*
Mutated AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP
DERAIMTYVS CFYHAFAGAE QAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT
IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF
MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK
EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN
DRCQKICDQW DRLGMLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ
DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS
TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI
ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI
RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA
CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS
DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL*
Position of stopcodon in wt / mu CDS 2685 / 2685
Position (AA) of stopcodon in wt / mu AA sequence 895 / 895
Position of stopcodon in wt / mu cDNA 2860 / 2860
Position of start ATG in wt / mu cDNA 176 / 176
Last intron/exon boundary 2701
Theoretical NMD boundary in CDS 2475
Length of CDS 2685
Coding sequence (CDS) position 1484
cDNA position 1659
gDNA position 83604
Chromosomal position 236747744
Speed 0.06 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

Back to summary table

Yum, tasty mutations...

MutationT@ster 2025

Variant:

1:236747744C>T_2_ENST00000542672

Back to summary table

Prediction:

DeleteriousPermalink

Summary:

  • Model: simple_aae
  • Tree vote: 90|10 (del | benign) ?
Analysed issue Analysis result
Variant Chr1:236747744C>T (GRCh38)
Gene symbol ACTN2
Gene constraints LOEUF: 0.45, LOF (oe): 0.34, misssense (oe): 0.82, synonymous (oe): 0.93 ? (gnomAD)
Ensembl transcript ID ENST00000542672.7
Genbank transcript ID NM_001278343 (by similarity)
UniProt / AlphaMissense peptide ACTN2_HUMAN | AlphaMissense: transcript, gene
Variant type Single base exchange
Gene region CDS
DNA changes c.1484C>T
g.83604C>T
AA changes
AAE:T495M?
Score:81
Frameshift No
Length of protein Normal
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs200248944
gnomADhomozygous (T/T)heterozygousallele carriers
1699700
Protein conservation
SpeciesMatchGeneAAAlignment
Human      495QKICDQWDRLGTLTQKRREALERM
mutated  not conserved    495QKICDQWDRLGMLTQKRREALER
Ptroglodytes  no homologue    
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  no homologue    
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
Protein features
Start (aa)End (aa)FeatureDetails 
1894CHAINlost
401506REPEATSpectrinlost
476536HELIXlost
Phylogenetic conservation
PhyloPPhastCons
(flanking)6.311
5.9611
(flanking)-1.1860.002
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? No
poly(A) signal N/A
AA sequence altered Yes
Chromosome 1
Strand 1
Original gDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered gDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Original cDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered cDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Wildtype AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDLVYTARP
DERAIMTYVS CYYHAFAGAQ KAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT
IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF
MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK
EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN
DRCQKICDQW DRLGTLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ
DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS
TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI
ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI
RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA
CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS
DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL*
Mutated AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDLVYTARP
DERAIMTYVS CYYHAFAGAQ KAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT
IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF
MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK
EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN
DRCQKICDQW DRLGMLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ
DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS
TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI
ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI
RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA
CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS
DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL*
Position of stopcodon in wt / mu CDS 2685 / 2685
Position (AA) of stopcodon in wt / mu AA sequence 895 / 895
Position of stopcodon in wt / mu cDNA 2860 / 2860
Position of start ATG in wt / mu cDNA 176 / 176
Last intron/exon boundary 2701
Theoretical NMD boundary in CDS 2475
Length of CDS 2685
Coding sequence (CDS) position 1484
cDNA position 1659
gDNA position 83604
Chromosomal position 236747744
Speed 0.05 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

Back to summary table

Yum, tasty mutations...

MutationT@ster 2025

Variant:

1:236747744C>T_3_ENST00000682015

Back to summary table

Prediction:

DeleteriousPermalink

Summary:

  • Model: simple_aae
  • Tree vote: 90|10 (del | benign) ?
Analysed issue Analysis result
Variant Chr1:236747744C>T (GRCh38)
Gene symbol ACTN2
Gene constraints LOEUF: 0.45, LOF (oe): 0.34, misssense (oe): 0.83, synonymous (oe): 0.92 ? (gnomAD)
Ensembl transcript ID ENST00000682015.1
Genbank transcript ID
UniProt / AlphaMissense peptide N/A
Variant type Single base exchange
Gene region CDS
DNA changes c.1391C>T
g.83604C>T
AA changes
AAE:T464M?
Score:81
Frameshift No
Length of protein Normal
Pathogenic variant (ClinVar) Variant not listed in ClinVar as (likely) pathogenic.
Variant DBs
dbSNP IDrs200248944
gnomADhomozygous (T/T)heterozygousallele carriers
1699700
Protein conservation
SpeciesMatchGeneAAAlignment
Human      464QKICDQWDRLGTLTQKRREALERM
mutated  not conserved    464QKICDQWDRLGMLTQKRREALER
Ptroglodytes  no homologue    
Mmulatta  no homologue    
Fcatus  no homologue    
Mmusculus  no homologue    
Ggallus  no homologue    
Trubripes  no homologue    
Drerio  no homologue    
Dmelanogaster  no homologue    
Celegans  no homologue    
Xtropicalis  no homologue    
Protein features N/A
Phylogenetic conservation
PhyloPPhastCons
(flanking)6.311
5.9611
(flanking)-1.1860.002
?
Splice sites No abrogation of potential splice sites predicted by MaxEntScan.
Distance from splice site N/A
Kozak consensus sequence altered? No
poly(A) signal N/A
AA sequence altered Yes
Chromosome 1
Strand 1
Original gDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered gDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Original cDNA sequence snippet CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG
Altered cDNA sequence snippet CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG
Wildtype AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP
DERAIMTYVS CFYHAFAGAE QLLEWIRRTI PWLENRTPEK TMQAMQKKLE DFRDYRRKHK
PPKVQEKCQL EINFNTLQTK LRISNRPAFM PSEGKMVSDI AGAWQRLEQA EKGYEEWLLN
EIRRLERLEH LAEKFRQKAS THETWAYGKE QILLQKDYES ASLTEVRALL RKHEAFESDL
AAHQDRVEQI AAIAQELNEL DYHDAVNVND RCQKICDQWD RLGTLTQKRR EALERMEKLL
ETIDQLHLEF AKRAAPFNNW MEGAMEDLQD MFIVHSIEEI QSLITAHEQF KATLPEADGE
RQSIMAIQNE VEKVIQSYNI RISSSNPYST VTMDELRTKW DKVKQLVPIR DQSLQEELAR
QHANERLRRQ FAAQANAIGP WIQNKMEEIA RSSIQITGAL EDQMNQLKQY EHNIINYKNN
IDKLEGDHQL IQEALVFDNK HTNYTMEHIR VGWELLLTTI ARTINEVETQ ILTRDAKGIT
QEQMNEFRAS FNHFDRRKNG LMDHEDFRAC LISMGYDLGE AEFARIMTLV DPNGQGTVTF
QSFIDFMTRE TADTDTAEQV IASFRILASD KPYILAEELR RELPPDQAQY CIKRMPAYSG
PGSVPGALDY AAFSSALYGE SDL*
Mutated AA sequence MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE
NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE
EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW
KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP
DERAIMTYVS CFYHAFAGAE QLLEWIRRTI PWLENRTPEK TMQAMQKKLE DFRDYRRKHK
PPKVQEKCQL EINFNTLQTK LRISNRPAFM PSEGKMVSDI AGAWQRLEQA EKGYEEWLLN
EIRRLERLEH LAEKFRQKAS THETWAYGKE QILLQKDYES ASLTEVRALL RKHEAFESDL
AAHQDRVEQI AAIAQELNEL DYHDAVNVND RCQKICDQWD RLGMLTQKRR EALERMEKLL
ETIDQLHLEF AKRAAPFNNW MEGAMEDLQD MFIVHSIEEI QSLITAHEQF KATLPEADGE
RQSIMAIQNE VEKVIQSYNI RISSSNPYST VTMDELRTKW DKVKQLVPIR DQSLQEELAR
QHANERLRRQ FAAQANAIGP WIQNKMEEIA RSSIQITGAL EDQMNQLKQY EHNIINYKNN
IDKLEGDHQL IQEALVFDNK HTNYTMEHIR VGWELLLTTI ARTINEVETQ ILTRDAKGIT
QEQMNEFRAS FNHFDRRKNG LMDHEDFRAC LISMGYDLGE AEFARIMTLV DPNGQGTVTF
QSFIDFMTRE TADTDTAEQV IASFRILASD KPYILAEELR RELPPDQAQY CIKRMPAYSG
PGSVPGALDY AAFSSALYGE SDL*
Position of stopcodon in wt / mu CDS 2592 / 2592
Position (AA) of stopcodon in wt / mu AA sequence 864 / 864
Position of stopcodon in wt / mu cDNA 2627 / 2627
Position of start ATG in wt / mu cDNA 36 / 36
Last intron/exon boundary 2468
Theoretical NMD boundary in CDS 2382
Length of CDS 2592
Coding sequence (CDS) position 1391
cDNA position 1426
gDNA position 83604
Chromosomal position 236747744
Speed 0.04 s

All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project

Back to summary table