Transcript | Gene symbol | Prediction | Tree vote | Model | Prediction problem | Splice site change | Known ClinVar disease mutation | Potential ClinVar disease mutation | Amino acid changes | Variant type | dbSNP ID | Protein length | Features at a glance |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ENST00000366578(MANE Select) | ACTN2 | Deleterious | 77|23 | simple_ | No | Single base exchange | Normal |
| |||||
ACTN2 | Deleterious | 90|10 | simple_ | No | Single base exchange | Normal |
| ||||||
ACTN2 | Deleterious | 90|10 | simple_ | No | Single base exchange | Normal |
|
Analysed issue | Analysis result | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr1:236747744C>T (GRCh38) | |||||||||||||||||||||
Gene symbol | ACTN2 | |||||||||||||||||||||
Gene constraints | LOEUF: 0.43, LOF (oe): 0.33, misssense (oe): 0.82, synonymous (oe): 0.93 (gnomAD) | |||||||||||||||||||||
Ensembl transcript ID | ENST00000366578.6 | |||||||||||||||||||||
Genbank transcript ID | NM_001103 (exact from MANE) | |||||||||||||||||||||
UniProt / AlphaMissense peptide | ACTN2_HUMAN | AlphaMissense: transcript, gene | |||||||||||||||||||||
Variant type | Single base exchange | |||||||||||||||||||||
Gene region | CDS | |||||||||||||||||||||
DNA changes | c.1484C>T g.83604C>T | |||||||||||||||||||||
AA changes |
| |||||||||||||||||||||
Frameshift | No | |||||||||||||||||||||
Length of protein | Normal | |||||||||||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||||||||||
Variant DBs |
| |||||||||||||||||||||
Protein conservation | ||||||||||||||||||||||
Protein features |
| |||||||||||||||||||||
Phylogenetic conservation |
| |||||||||||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||||||||||
Distance from splice site | N/A | |||||||||||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||||||||||
poly(A) signal | N/A | |||||||||||||||||||||
AA sequence altered | Yes | |||||||||||||||||||||
Chromosome | 1 | |||||||||||||||||||||
Strand | 1 | |||||||||||||||||||||
Original gDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Altered gDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Original cDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Altered cDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Wildtype AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP DERAIMTYVS CFYHAFAGAE QAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN DRCQKICDQW DRLGTLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL* | |||||||||||||||||||||
Mutated AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP DERAIMTYVS CFYHAFAGAE QAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN DRCQKICDQW DRLGMLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL* | |||||||||||||||||||||
Position of stopcodon in wt / mu CDS | 2685 / 2685 | |||||||||||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 895 / 895 | |||||||||||||||||||||
Position of stopcodon in wt / mu cDNA | 2860 / 2860 | |||||||||||||||||||||
Position of start ATG in wt / mu cDNA | 176 / 176 | |||||||||||||||||||||
Last intron/exon boundary | 2701 | |||||||||||||||||||||
Theoretical NMD boundary in CDS | 2475 | |||||||||||||||||||||
Length of CDS | 2685 | |||||||||||||||||||||
Coding sequence (CDS) position | 1484 | |||||||||||||||||||||
cDNA position | 1659 | |||||||||||||||||||||
gDNA position | 83604 | |||||||||||||||||||||
Chromosomal position | 236747744 | |||||||||||||||||||||
Speed | 0.06 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr1:236747744C>T (GRCh38) | |||||||||||||||||||||
Gene symbol | ACTN2 | |||||||||||||||||||||
Gene constraints | LOEUF: 0.45, LOF (oe): 0.34, misssense (oe): 0.82, synonymous (oe): 0.93 (gnomAD) | |||||||||||||||||||||
Ensembl transcript ID | ENST00000542672.7 | |||||||||||||||||||||
Genbank transcript ID | NM_001278343 (by similarity) | |||||||||||||||||||||
UniProt / AlphaMissense peptide | ACTN2_HUMAN | AlphaMissense: transcript, gene | |||||||||||||||||||||
Variant type | Single base exchange | |||||||||||||||||||||
Gene region | CDS | |||||||||||||||||||||
DNA changes | c.1484C>T g.83604C>T | |||||||||||||||||||||
AA changes |
| |||||||||||||||||||||
Frameshift | No | |||||||||||||||||||||
Length of protein | Normal | |||||||||||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||||||||||
Variant DBs |
| |||||||||||||||||||||
Protein conservation | ||||||||||||||||||||||
Protein features |
| |||||||||||||||||||||
Phylogenetic conservation |
| |||||||||||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||||||||||
Distance from splice site | N/A | |||||||||||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||||||||||
poly(A) signal | N/A | |||||||||||||||||||||
AA sequence altered | Yes | |||||||||||||||||||||
Chromosome | 1 | |||||||||||||||||||||
Strand | 1 | |||||||||||||||||||||
Original gDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Altered gDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Original cDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Altered cDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||||||||||
Wildtype AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDLVYTARP DERAIMTYVS CYYHAFAGAQ KAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN DRCQKICDQW DRLGTLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL* | |||||||||||||||||||||
Mutated AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDLVYTARP DERAIMTYVS CYYHAFAGAQ KAETAANRIC KVLAVNQENE RLMEEYERLA SELLEWIRRT IPWLENRTPE KTMQAMQKKL EDFRDYRRKH KPPKVQEKCQ LEINFNTLQT KLRISNRPAF MPSEGKMVSD IAGAWQRLEQ AEKGYEEWLL NEIRRLERLE HLAEKFRQKA STHETWAYGK EQILLQKDYE SASLTEVRAL LRKHEAFESD LAAHQDRVEQ IAAIAQELNE LDYHDAVNVN DRCQKICDQW DRLGMLTQKR REALERMEKL LETIDQLHLE FAKRAAPFNN WMEGAMEDLQ DMFIVHSIEE IQSLITAHEQ FKATLPEADG ERQSIMAIQN EVEKVIQSYN IRISSSNPYS TVTMDELRTK WDKVKQLVPI RDQSLQEELA RQHANERLRR QFAAQANAIG PWIQNKMEEI ARSSIQITGA LEDQMNQLKQ YEHNIINYKN NIDKLEGDHQ LIQEALVFDN KHTNYTMEHI RVGWELLLTT IARTINEVET QILTRDAKGI TQEQMNEFRA SFNHFDRRKN GLMDHEDFRA CLISMGYDLG EAEFARIMTL VDPNGQGTVT FQSFIDFMTR ETADTDTAEQ VIASFRILAS DKPYILAEEL RRELPPDQAQ YCIKRMPAYS GPGSVPGALD YAAFSSALYG ESDL* | |||||||||||||||||||||
Position of stopcodon in wt / mu CDS | 2685 / 2685 | |||||||||||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 895 / 895 | |||||||||||||||||||||
Position of stopcodon in wt / mu cDNA | 2860 / 2860 | |||||||||||||||||||||
Position of start ATG in wt / mu cDNA | 176 / 176 | |||||||||||||||||||||
Last intron/exon boundary | 2701 | |||||||||||||||||||||
Theoretical NMD boundary in CDS | 2475 | |||||||||||||||||||||
Length of CDS | 2685 | |||||||||||||||||||||
Coding sequence (CDS) position | 1484 | |||||||||||||||||||||
cDNA position | 1659 | |||||||||||||||||||||
gDNA position | 83604 | |||||||||||||||||||||
Chromosomal position | 236747744 | |||||||||||||||||||||
Speed | 0.05 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project
Analysed issue | Analysis result | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Variant | Chr1:236747744C>T (GRCh38) | |||||||||||||
Gene symbol | ACTN2 | |||||||||||||
Gene constraints | LOEUF: 0.45, LOF (oe): 0.34, misssense (oe): 0.83, synonymous (oe): 0.92 (gnomAD) | |||||||||||||
Ensembl transcript ID | ENST00000682015.1 | |||||||||||||
Genbank transcript ID | ||||||||||||||
UniProt / AlphaMissense peptide | N/A | |||||||||||||
Variant type | Single base exchange | |||||||||||||
Gene region | CDS | |||||||||||||
DNA changes | c.1391C>T g.83604C>T | |||||||||||||
AA changes |
| |||||||||||||
Frameshift | No | |||||||||||||
Length of protein | Normal | |||||||||||||
Pathogenic variant (ClinVar) | Variant not listed in ClinVar as (likely) pathogenic. | |||||||||||||
Variant DBs |
| |||||||||||||
Protein conservation | ||||||||||||||
Protein features | N/A | |||||||||||||
Phylogenetic conservation |
| |||||||||||||
Splice sites | No abrogation of potential splice sites predicted by MaxEntScan. | |||||||||||||
Distance from splice site | N/A | |||||||||||||
Kozak consensus sequence altered? | No | |||||||||||||
poly(A) signal | N/A | |||||||||||||
AA sequence altered | Yes | |||||||||||||
Chromosome | 1 | |||||||||||||
Strand | 1 | |||||||||||||
Original gDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||
Altered gDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||
Original cDNA sequence snippet | CCAGTGGGACCGACTGGGAACGCTTACTCAGAAGAGGAGAG | |||||||||||||
Altered cDNA sequence snippet | CCAGTGGGACCGACTGGGAATGCTTACTCAGAAGAGGAGAG | |||||||||||||
Wildtype AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP DERAIMTYVS CFYHAFAGAE QLLEWIRRTI PWLENRTPEK TMQAMQKKLE DFRDYRRKHK PPKVQEKCQL EINFNTLQTK LRISNRPAFM PSEGKMVSDI AGAWQRLEQA EKGYEEWLLN EIRRLERLEH LAEKFRQKAS THETWAYGKE QILLQKDYES ASLTEVRALL RKHEAFESDL AAHQDRVEQI AAIAQELNEL DYHDAVNVND RCQKICDQWD RLGTLTQKRR EALERMEKLL ETIDQLHLEF AKRAAPFNNW MEGAMEDLQD MFIVHSIEEI QSLITAHEQF KATLPEADGE RQSIMAIQNE VEKVIQSYNI RISSSNPYST VTMDELRTKW DKVKQLVPIR DQSLQEELAR QHANERLRRQ FAAQANAIGP WIQNKMEEIA RSSIQITGAL EDQMNQLKQY EHNIINYKNN IDKLEGDHQL IQEALVFDNK HTNYTMEHIR VGWELLLTTI ARTINEVETQ ILTRDAKGIT QEQMNEFRAS FNHFDRRKNG LMDHEDFRAC LISMGYDLGE AEFARIMTLV DPNGQGTVTF QSFIDFMTRE TADTDTAEQV IASFRILASD KPYILAEELR RELPPDQAQY CIKRMPAYSG PGSVPGALDY AAFSSALYGE SDL* | |||||||||||||
Mutated AA sequence | MNQIEPGVQY NYVYDEDEYM IQEEEWDRDL LLDPAWEKQQ RKTFTAWCNS HLRKAGTQIE NIEEDFRNGL KLMLLLEVIS GERLPKPDRG KMRFHKIANV NKALDYIASK GVKLVSIGAE EIVDGNVKMT LGMIWTIILR FAIQDISVEE TSAKEGLLLW CQRKTAPYRN VNIQNFHTSW KDGLGLCALI HRHRPDLIDY SKLNKDDPIG NINLAMEIAE KHLDIPKMLD AEDIVNTPKP DERAIMTYVS CFYHAFAGAE QLLEWIRRTI PWLENRTPEK TMQAMQKKLE DFRDYRRKHK PPKVQEKCQL EINFNTLQTK LRISNRPAFM PSEGKMVSDI AGAWQRLEQA EKGYEEWLLN EIRRLERLEH LAEKFRQKAS THETWAYGKE QILLQKDYES ASLTEVRALL RKHEAFESDL AAHQDRVEQI AAIAQELNEL DYHDAVNVND RCQKICDQWD RLGMLTQKRR EALERMEKLL ETIDQLHLEF AKRAAPFNNW MEGAMEDLQD MFIVHSIEEI QSLITAHEQF KATLPEADGE RQSIMAIQNE VEKVIQSYNI RISSSNPYST VTMDELRTKW DKVKQLVPIR DQSLQEELAR QHANERLRRQ FAAQANAIGP WIQNKMEEIA RSSIQITGAL EDQMNQLKQY EHNIINYKNN IDKLEGDHQL IQEALVFDNK HTNYTMEHIR VGWELLLTTI ARTINEVETQ ILTRDAKGIT QEQMNEFRAS FNHFDRRKNG LMDHEDFRAC LISMGYDLGE AEFARIMTLV DPNGQGTVTF QSFIDFMTRE TADTDTAEQV IASFRILASD KPYILAEELR RELPPDQAQY CIKRMPAYSG PGSVPGALDY AAFSSALYGE SDL* | |||||||||||||
Position of stopcodon in wt / mu CDS | 2592 / 2592 | |||||||||||||
Position (AA) of stopcodon in wt / mu AA sequence | 864 / 864 | |||||||||||||
Position of stopcodon in wt / mu cDNA | 2627 / 2627 | |||||||||||||
Position of start ATG in wt / mu cDNA | 36 / 36 | |||||||||||||
Last intron/exon boundary | 2468 | |||||||||||||
Theoretical NMD boundary in CDS | 2382 | |||||||||||||
Length of CDS | 2592 | |||||||||||||
Coding sequence (CDS) position | 1391 | |||||||||||||
cDNA position | 1426 | |||||||||||||
gDNA position | 83604 | |||||||||||||
Chromosomal position | 236747744 | |||||||||||||
Speed | 0.04 s |
All positions are in basepairs (bp) if not explicitly stated differently. cDNA/gDNA/chromosomal position: Ins/del are shown as 'last normal base / first normal base'.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project