mutation t@sting

Prediction

polymorphism

Model: simple_aae, prob: 0.999999994326589 (classification due to TGP/ExAC, real probability is shown anyway) (explain)

Summary

amino acid sequence changed
homozygous in TGP or ExAC
known disease mutation at this position (HGMD CM058363)
protein features (might be) affected
splice site changes

hyperlink

analysed issue

analysis result

name of alteration

no title

alteration (phys. location)

chr3:121838319G>AN/A show variant in all transcripts IGV

HGNC symbol

CD86

Ensembl transcript ID

ENST00000264468

Genbank transcript ID

N/A

UniProt peptide

P42081

alteration type

single base exchange

alteration region

CDS

DNA changes

c.289G>A
cDNA.405G>A
g.64107G>A

AA changes

A97T Score: 58 explain score(s)

position(s) of altered AA
if AA alteration in CDS

frameshift

known variant

Reference ID: rs1129055

database	homozygous (A/A)	heterozygous	allele carriers
1000G	-	-	-
ExAC	6546	19675	26221

known disease mutation at this position, please check HGMD for details (HGMD ID CM058363)

regulatory features

H3K27me3, Histone, Histone 3 Lysine 27 Tri-Methylation
H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation

phyloP / phastCons

	PhyloP	PhastCons
(flanking)	0.975	0.031
	1.29	0.034
(flanking)	-0.987	0

explain score(s) and/or inspect your position(s) in in UCSC Genome Browser

splice sites

effect	gDNA position	score	wt detection sequence	exon-intron border
Donor increased	64108	wt: 0.80 / mu: 0.92	wt: TGAAGCCCAGCGTGT mu: TGAAACCCAGCGTGT	AAGC\|ccag

distance from splice site

Kozak consensus sequence altered?

N/A

conservation
protein level for non-synonymous changes

species

match

gene

alignment

Human

mutated

not conserved

Ptroglodytes

all identical

ENSPTRG00000015288

310

Mmulatta

all identical

ENSMMUG00000000912

309

Fcatus

all identical

ENSFCAG00000008716

309

Mmusculus

no alignment

ENSMUSG00000022901

n/a

Ggallus

no alignment

ENSGALG00000014362

n/a

Trubripes

no homologue

Drerio

no homologue

Dmelanogaster

no homologue

Celegans

no homologue

Xtropicalis

no homologue

protein features

start (aa)	end (aa)	feature	details
24	247	TOPO_DOM	Extracellular (Potential).	lost
33	131	DOMAIN	Ig-like V-type.	lost
94	97	STRAND		lost
102	104	HELIX		might get lost (downstream of altered splice site)
106	115	STRAND		might get lost (downstream of altered splice site)
110	110	DISULFID		might get lost (downstream of altered splice site)
117	133	STRAND		might get lost (downstream of altered splice site)
135	135	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
146	146	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
150	225	DOMAIN	Ig-like C2-type.	might get lost (downstream of altered splice site)
154	154	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
157	157	DISULFID	Potential.	might get lost (downstream of altered splice site)
177	177	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
192	192	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
213	213	CARBOHYD	N-linked (GlcNAc...) (Potential).	might get lost (downstream of altered splice site)
218	218	DISULFID	Potential.	might get lost (downstream of altered splice site)
248	268	TRANSMEM	Helical; (Potential).	might get lost (downstream of altered splice site)
269	329	TOPO_DOM	Cytoplasmic (Potential).	might get lost (downstream of altered splice site)

length of protein

normal

AA sequence altered

yes

position of stopcodon in wt / mu CDS

351 / 351

position (AA) of stopcodon in wt / mu AA sequence

117 / 117

position of stopcodon in wt / mu cDNA

467 / 467

poly(A) signal

N/A

conservation
nucleotide level for all changes - no scoring up to now

N/A

position of start ATG in wt / mu cDNA

117 / 117

chromosome

strand

last intron/exon boundary

371

theoretical NMD boundary in CDS

204

length of CDS

351

coding sequence (CDS) position

289

cDNA position
(for ins/del: last normal base / first normal base)

405

gDNA position
(for ins/del: last normal base / first normal base)

64107

chromosomal position
(for ins/del: last normal base / first normal base)

121838319

original gDNA sequence snippet

TACCTGAAAGATCTGATGAAGCCCAGCGTGTTTTTAAAAGT

altered gDNA sequence snippet

TACCTGAAAGATCTGATGAAACCCAGCGTGTTTTTAAAAGT

original cDNA sequence snippet

TACCTGAAAGATCTGATGAAGCCCAGCGTGTTTTTAAAAGT

altered cDNA sequence snippet

TACCTGAAAGATCTGATGAAACCCAGCGTGTTTTTAAAAGT

wildtype AA sequence

MDPQCTMGLS NILFVMAFLL SELEDPQPPP DHIPWITAVL PTVIICVMVF CLILWKWKKK
KRPRNSYKCG TNTMEREESE QTKKREKIHI PERSDEAQRV FKSSKTSSCD KSDTCF*

mutated AA sequence

MDPQCTMGLS NILFVMAFLL SELEDPQPPP DHIPWITAVL PTVIICVMVF CLILWKWKKK
KRPRNSYKCG TNTMEREESE QTKKREKIHI PERSDETQRV FKSSKTSSCD KSDTCF*

speed

1.11 s

All positions are in basepairs (bp) if not explicitly stated differently.
AA/aa: amino acid; CDS: coding sequence; mu: mutated; NMD: nonsense-mediated mRNA decay; nt: nucleotide; wt: wildtype; TGP: 1000 Genomes Project