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mutation t@sting |
documentation |
Prediction |
disease causing |
Model: without_aae, prob: 1 (classification due to ClinVar, real probability is shown anyway) (explain) | ||||||||||||
| Summary |
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hyperlink | ||||||||||||
| analysed issue | analysis result | |||||||||||||
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| name of alteration | no title | |||||||||||||
| alteration (phys. location) | chr1:227153420C>TN/A show variant in all transcripts IGV | |||||||||||||
| HGNC symbol | COQ8A | |||||||||||||
| Ensembl transcript ID | ENST00000433743 | |||||||||||||
| Genbank transcript ID | N/A | |||||||||||||
| UniProt peptide | N/A | |||||||||||||
| alteration type | single base exchange | |||||||||||||
| alteration region | 5'UTR | |||||||||||||
| DNA changes | cDNA.39C>T g.68184C>T | |||||||||||||
| AA changes | N/A | |||||||||||||
| position(s) of altered AA if AA alteration in CDS | N/A | |||||||||||||
| frameshift | N/A | |||||||||||||
| known variant | Reference ID: rs119468005
known disease mutation: rs3637 (pathogenic for Coenzyme Q10 deficiency, primary, 4) dbSNP NCBI variation viewer known disease mutation at this position, please check HGMD for details (HGMD ID CM081192) known disease mutation at this position, please check HGMD for details (HGMD ID CM081192) known disease mutation at this position, please check HGMD for details (HGMD ID CM081192) | |||||||||||||
| regulatory features | H3K36me3, Histone, Histone 3 Lysine 36 Tri-Methylation | |||||||||||||
| phyloP / phastCons |
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| splice sites | no abrogation of potential splice sites | |||||||||||||
| distance from splice site | 19 | |||||||||||||
| Kozak consensus sequence altered? | no | |||||||||||||
| conservation protein level for non-synonymous changes | N/A | |||||||||||||
| protein features | N/A | |||||||||||||
| length of protein | N/A | |||||||||||||
| AA sequence altered | N/A | |||||||||||||
| position of stopcodon in wt / mu CDS | N/A | |||||||||||||
| position (AA) of stopcodon in wt / mu AA sequence | N/A | |||||||||||||
| position of stopcodon in wt / mu cDNA | N/A | |||||||||||||
| poly(A) signal | N/A | |||||||||||||
| conservation nucleotide level for all changes - no scoring up to now | N/A | |||||||||||||
| position of start ATG in wt / mu cDNA | 240 / 240 | |||||||||||||
| chromosome | 1 | |||||||||||||
| strand | 1 | |||||||||||||
| last intron/exon boundary | 921 | |||||||||||||
| theoretical NMD boundary in CDS | 631 | |||||||||||||
| length of CDS | 966 | |||||||||||||
| coding sequence (CDS) position | N/A | |||||||||||||
| cDNA position (for ins/del: last normal base / first normal base) | 39 | |||||||||||||
| gDNA position (for ins/del: last normal base / first normal base) | 68184 | |||||||||||||
| chromosomal position (for ins/del: last normal base / first normal base) | 227153420 | |||||||||||||
| original gDNA sequence snippet | TGCCTGTGACGAGGATTGGCCGGCTGGCCAACTTCGGAGGT | |||||||||||||
| altered gDNA sequence snippet | TGCCTGTGACGAGGATTGGCTGGCTGGCCAACTTCGGAGGT | |||||||||||||
| original cDNA sequence snippet | TGCCTGTGACGAGGATTGGCCGGCTGGCCAACTTCGGAGGT | |||||||||||||
| altered cDNA sequence snippet | TGCCTGTGACGAGGATTGGCTGGCTGGCCAACTTCGGAGGT | |||||||||||||
| wildtype AA sequence | MLSIQDDAFI NPHLAKIFER VRQSADFMPL KQMMYPGVAQ SINSDVNNLM AVLNMSNMLP EGLFPEHLID VLRRELALEC DYQREAACAR KFRDLLKGHP FFYVPEIVDE LCSPHVLTTE LVSGFPLDQA EGLSQEIRNE ICYNILVLCL RELFEFHFMQ TDPNWSNFFY DPQQHKVALL DFGATREYDR SFTDLYIQII RAAADRDRET VRAKSIEMKF LTGYEVKVME DAHLDAILIL GEAFASDEPF DFGTQSTTEK IHNLIPVMLR HRLVPPPEET YSLHRKMGGS FLICSKLKAR FPCKAMFEEA YSNYCKRQAQ Q* | |||||||||||||
| mutated AA sequence | N/A | |||||||||||||
| speed | 1.06 s | |||||||||||||